miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|29681071|gb|CB677346.1|CB677346 GGAAAAAGTACATGTGAGGTCCCTCATCTTATCACCGAATTACAAAATTGTCCCTCAACCGAAAAACCAGATATATGATA
TCCCTTATCTTACAAAACCAGGTCAGTTTATGTCCTTTGGCGGTATTGACTCCGGTTTTATCCCATGCTGACTCAGCTAT
CACGTCGGATGAAACTGGAGTCAACCAGAATCAATATTGCCTAAGGACTTAAAGTGATCCGGTTTTATAAGTTGAGGGAC
GTTATATATCTGTTTTTTTCTTTGTTTGGGGATGATTTTGTGATTCGGTGAAAATATGAGCGACCTCAGATGCATTTTTT
CCACAAAAAAAATCGCTTCATGATAGACAAAAAAATATATGGGCCAGATAACCAATGCAAGCAAAAAGCAGGAGTCCAAC
AGCACTTTAAAAGAGTCCATGAGGAATTTGGAAATAACAAACTCCTGTTGGCCTATTCTGGTATGTTGTCATATTTTTCC
AATACCTGTTAATACTTAGTAATTTTATGAACGTTTGGACCCAGACAGCTTGAACCTTACTGCTTTCAAGATTCTGTACA
TCAGTTTGTAATTATGTGAACGTATGGACTTCGACACAAAAAACAACTCATGCATGTAATAATTCCCTTGATATGCAAAA
CTCCAAGCTTAATTTTTCAGTGTTTTAGATGCAAGGTTTCTTTTGATCATTTCCTTATGTGGTCTATATGTGCAGGGATG
GTGTGAGCGAGTCTCAATTTAGCCAAGTACTGAATGTTGAGCTTAATCAAATTATAAAGGCATATCAATATATGGATCAG
GGGCCAATTCCTAAGTTCACAGTGATCATTGCTCAAAAGAATCACCACACAAAACTTTTCCA




Most similar to sp|Q6YSJ5|AGO16_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp.
           japonica GN=AGO16 PE=2 SV=2
          Length = 883

 Score =  103 bits (256), Expect = 2e-21
 Identities = 50/56 (89%), Positives = 52/56 (92%)
 Frame = +3

Query: 693 PYVVYMCRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLF 860
           P  + + RDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLF
Sbjct: 693 PKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLF 748